Package: IPMbook 0.1.5

IPMbook: Functions and Data for the Book 'Integrated Population Models'

Provides functions and data sets to accompany the book 'Integrated Population Models: Theory and Ecological Applications with R and JAGS' by Michael Schaub and Marc Kéry (ISBN: 9780128205648).

Authors:Michael Schaub [aut], Marc Kéry [aut], Mike Meredith [aut], Ken Kellner [cre], Raphaël Arlettaz [dtc], Gabriel Banderet [dtc], François Biollaz [dtc], Radames Bionda [dtc], Thomas Bregnballe [dtc], Hans Jakober [dtc], Ioannis Ntzoufras [ctb], Luca Rotelli [dtc], Antoine Sierro [dtc], Wolfgang Stauber [dtc], Bruno Ullrich [dtc], Fonds Sauvegarde Faune Flore Jurassienne - Groupe Pèlerin Jura [dtc], Idaho Department of Fish and Game [dtc], Louisiana Department of Wildlife and Fisheries [dtc], Monitoring Avian Productivity and Survivorship program [dtc], North American Breeding Bird Survey [dtc], University Bern, Division of Conservation Biology [dtc], Vogelwarte Hiddensee, Germany [dtc], Swiss Ornithological Institute [dtc]

IPMbook_0.1.5.tar.gz
IPMbook_0.1.5.zip(r-4.5)IPMbook_0.1.5.zip(r-4.4)IPMbook_0.1.5.zip(r-4.3)
IPMbook_0.1.5.tgz(r-4.4-any)IPMbook_0.1.5.tgz(r-4.3-any)
IPMbook_0.1.5.tar.gz(r-4.5-noble)IPMbook_0.1.5.tar.gz(r-4.4-noble)
IPMbook_0.1.5.tgz(r-4.4-emscripten)IPMbook_0.1.5.tgz(r-4.3-emscripten)
IPMbook.pdf |IPMbook.html✨
IPMbook/json (API)
NEWS

# Install 'IPMbook' in R:
install.packages('IPMbook', repos = c('https://kenkellner.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/kenkellner/ipmbook/issues

Datasets:
  • bats - Data for greater horseshoe bats from Switzerland, 1989-2017
  • bear - Data for black bears in Louisiana, USA, 2007-2012
  • catbird - Data for gray catbird from New England/Mid-Atlantic region, USA, 1992-2008
  • cormorant - Data from three Danish cormorant breeding colonies, 1991-2004
  • elk - Data from an elk population in USA, 1988-1993
  • grouse - Data for black grouse from Italy, 1997-2016
  • hoopoe - Data for hoopoe from Switzerland, 2002-2017
  • kestrel - Data for kestrels from Switzerland, 2002-2016
  • peregrine - Data for peregrine falcons from the Jura Mountains, 1965-2007
  • redbacked - Data for red-backed shrike from Germany, 1971-2006
  • stork - Data on marked white storks in Germany, 1986-2001
  • swallow - Data for barn swallows in Switzerland, 1997-2003
  • woodchat10 - Simulated data for woodchat shrike for use in chapter 10
  • woodchat11 - Data for woodchat shrike from Germany, 1964-1992
  • woodchat5 - Simulated data for woodchat shrike for use in chapter 5
  • woodchat6 - Simulated data for woodchat shrike for use in section 6.3
  • woodchat64 - Simulated data for woodchat shrike for use in section 6.4
  • woodchat66 - Simulated data for woodchat shrike for use in section 6.6
  • woodchat7 - Simulated data for woodchat shrike for use in chapter 7
  • wryneck - Data from wrynecks in Switzerland, 2002-2006

On CRAN:

3.88 score 152 scripts 353 downloads 36 exports 1 dependencies

Last updated 1 years agofrom:7dab3282be. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 15 2024
R-4.5-winOKOct 15 2024
R-4.5-linuxOKOct 15 2024
R-4.4-winOKOct 15 2024
R-4.4-macOKOct 15 2024
R-4.3-winOKOct 15 2024
R-4.3-macOKOct 15 2024

Exports:ch2matrixcleanCHcreateAgedbeta2dbeta3demoMCMCdgamma2dUnifgetBeta2PargetBeta3PargetFirstgetGammaParmarraymarrayAgemarrayDeadpbeta2pbeta3pgamma2qbeta2qbeta3qgamma2rbeta2rbeta3rgamma2rmFirstsimCapHistsimCountBinsimCountNormsimCountPoissimMHBsimPopsimProdsummaryPopzInitzInitDRzKnown

Dependencies:abind

Readme and manuals

Help Manual

Help pageTopics
Functions and data for the book 'Integrated Population Models'IPMbook-package IPMbook
Data for greater horseshoe bats from Switzerland, 1989-2017bats
Data for black bears in Louisiana, USA, 2007-2012bear
The beta distributionBetaDist dbeta2 dbeta3 getBeta2Par getBeta3Par pbeta2 pbeta3 qbeta2 qbeta3 rbeta2 rbeta3
Data for gray catbird from New England/Mid-Atlantic region, USA, 1992-2008catbird
Convert capture histories in text format to a matrixch2matrix
Data from three Danish cormorant breeding colonies, 1991-2004cormorant
Creates an age matrixcreateAge
Demonstration of a random-walk sampler for a single parameterdemoMCMC
Discrete uniform prior distributiondUnif
Data from an elk population in USA, 1988-1993elk
Quick and dirty specification of matricesabbreviated fixAmatrix
The gamma distributiondgamma2 GammaDist getGammaPar pgamma2 qgamma2 rgamma2
Data for black grouse from Italy, 1997-2016grouse
Various helper functionscleanCH getFirst rmFirst zInit zInitDR zKnown
Data for hoopoe from Switzerland, 2002-2017hoopoe
Data for kestrels from Switzerland, 2002-2016kestrel
Converts capture-histories to an m-array for one age classmarray
Creates age-dependent m-arraysmarrayAge
Converts dead-recovery capture histories to an m-arraymarrayDead
Data for peregrine falcons from the Jura Mountains, 1965-2007peregrine
Data for red-backed shrike from Germany, 1971-2006redbacked
Simulates capture histories from a populationsimCapHist
Simulates count survey datasimCount simCountBin simCountNorm simCountPois
Simulates detection and count data with spatial and temporal replicationsimMHB
Simulates a population based on demographic parameterssimPop
Simulates productivity datasimProd
Data on marked white storks in Germany, 1986-2001stork
Calculates summary statistics from a subset of a populationsummaryPop
Data for barn swallows in Switzerland, 1997-2003swallow
Simulated data for woodchat shrike for use in chapter 10woodchat10
Data for woodchat shrike from Germany, 1964-1992woodchat11
Simulated data for woodchat shrike for use in chapter 5woodchat5
Simulated data for woodchat shrike for use in section 6.3woodchat6
Simulated data for woodchat shrike for use in section 6.4woodchat64
Simulated data for woodchat shrike for use in section 6.6woodchat66
Simulated data for woodchat shrike for use in chapter 7woodchat7
Data from wrynecks in Switzerland, 2002-2006wryneck