Installing JAGS | Typical jagsUI Workflow | 1. Organize data | 2. Write BUGS model file | 3. Initial values | 4. Parameters to monitor | 5. MCMC settings | 6. Run JAGS | 7. Examine output | Diagnostics | Posteriors | Update
Package: jagsUI 1.6.3
jagsUI: A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses
A set of wrappers around 'rjags' functions to run Bayesian analyses in 'JAGS' (specifically, via 'libjags'). A single function call can control adaptive, burn-in, and sampling MCMC phases, with MCMC chains run in sequence or in parallel. Posterior distributions are automatically summarized (with the ability to exclude some monitored nodes if desired) and functions are available to generate figures based on the posteriors (e.g., predictive check plots, traceplots). Function inputs, argument syntax, and output format are nearly identical to the 'R2WinBUGS'/'R2OpenBUGS' packages to allow easy switching between MCMC samplers.
Authors:
jagsUI_1.6.3.tar.gz
jagsUI_1.6.3.zip(r-4.7)jagsUI_1.6.3.zip(r-4.6)jagsUI_1.6.3.zip(r-4.5)
jagsUI_1.6.3.tgz(r-4.6-any)jagsUI_1.6.3.tgz(r-4.5-any)
jagsUI_1.6.3.tar.gz(r-4.7-any)jagsUI_1.6.3.tar.gz(r-4.6-any)
jagsUI_1.6.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
jagsUI/json (API)
| # Install 'jagsUI' in R: |
| install.packages('jagsUI', repos = c('https://kenkellner.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kenkellner/jagsui/issues
Last updated from:cea4dac3ad. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 106 | ||
| source / vignettes | OK | 160 | ||
| linux-release-x86_64 | OK | 111 | ||
| macos-release-arm64 | OK | 89 | ||
| macos-oldrel-arm64 | OK | 76 | ||
| windows-devel | OK | 68 | ||
| windows-release | OK | 67 | ||
| windows-oldrel | OK | 64 | ||
| wasm-release | OK | 92 |
Exports:autojagsdensityplotjagsjags.basicjags.ViewjagsUIpp.checktraceplotwhiskerplot
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Automatically run jagsUI analyses to convergence | autojags |
| Density plots of JAGS output | densityplot |
| Call JAGS from R | jags jagsUI jagsUI-class |
| Simplified function to call JAGS from R | jags.basic jagsUIbasic-class |
| View a jagsUI output object in a separate window | jags.View |
| Posterior Predictive Checks for Bayesian Analyses fit in JAGS | pp.check |
| Traceplots of JAGS output | traceplot |
| Update a JAGS model | update update.jagsUI update.jagsUIbasic |
| Whisker plots of parameter posterior distributions | whiskerplot |
